SNP Profiles of LF 1 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	GG	CC	TT	TT	AA	CC	GG	CT	CC	AA	AA	CT	AG
1._LF_1	CC	GG	CC	TT	TT	AA	CC	GG	CT	CC	AA	AA	CT	AG
2._LF_1	CC	GG	CC	TT	TT	AA	CC	GG	CT	CC	AA	AA	CT	AG
3._LF_1	CC	GG	CC	TT	TT	AA	CC	GG	CT	CC	AA	AA	CT	AG
4._LF_1	CC	GG	CC	TT	TT	AA	CC	GG	CT	CC	AA	AA	CT	AG
5._GC-08-285-8-57	CC	GG	CC	TT	TT	AA	CC	GG	CT	CC	AA	AA	CT	AG
6._GC-08-285-8-57	CC	GG	CC	TT	TT	AA	CC	GG	CT	CC	AA	AA	CT	AG
7._GC-08-285-8-57	CC	GG	CC	TT	TT	AA	CC	GG	CT	CC	AA	AA	CT	AG
8._GC-08-285-8-57	CC	GG	CC	TT	TT	AA	CC	GG	CT	CC	AA	AA	CT	AG
9._RUQ_17	_	GG	CC	TT	_	_	_	-	_	_	_	_	CT	AG
10._RUQ_17	_	_	CC	_	_	_	_	GG	_	CC	_	AA	_	AG
11._RUQ_17	GG	GG	_	AA	AA	AA	GG	_	_	_	AA	AA	AG	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	GG	TT	CC	CC	TT	AG	CT	CC	CC	GG	CC	CC
1._LF_1	CT	AA	GG	TT	CC	CC	TT	_	CT	CC	CC	GG	CC	CC
2._LF_1	CT	AA	GG	TT	CC	CC	TT	_	CT	CC	CC	GG	CC	CC
3._LF_1	CT	AA	GG	TT	CC	CC	TT	_	CT	CC	CC	GG	CC	CC
4._LF_1	CT	AA	GG	TT	CC	CC	TT	_	CT	CC	CC	GG	CC	CC
5._GC-08-285-8-57	CT	AA	GG	TT	CC	CC	TT	_	CT	CC	CC	GG	CC	CC
6._GC-08-285-8-57	CT	AA	GG	TT	CC	CC	TT	_	CT	CC	CC	GG	CC	CC
7._GC-08-285-8-57	CT	AA	GG	TT	CC	CC	TT	_	CT	CC	CC	GG	CC	CC
8._GC-08-285-8-57	CT	AA	GG	TT	CC	CC	TT	_	CT	CC	CC	GG	CC	CC
9._RUQ_17	_	_	_	_	-	CC	TT	_	CT	CC	-	GG	CC	CC
10._RUQ_17	_	_	_	_	_	CC	TT	AG	_	CC	CC	_	_	AC
11._RUQ_17	AG	AA	GG	AA	GG	GG	AA	_	AG	CC	CC	CC	_	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	GG	GG	TT	TT	GG	GG	CC	CT	GT	AA	AA	GG	X_X	X_X
1._LF_1	GG	GG	TT	TT	GG	GG	CC	CT	GT	AA	AA	GG	X_X	X_X
2._LF_1	GG	GG	TT	TT	GG	GG	CC	CT	GT	AA	AA	GG	X_X	X_X
3._LF_1	GG	GG	TT	TT	GG	GG	CC	CT	GT	AA	AA	GG	X_X	X_X
4._LF_1	GG	GG	TT	TT	GG	GG	CC	CT	GT	AA	AA	GG	X_X	X_X
5._GC-08-285-8-57	GG	GG	TT	TT	GG	GG	CC	CT	GT	AA	AA	GG	X_X	X_X
6._GC-08-285-8-57	GG	GG	TT	TT	GG	GG	CC	CT	GT	AA	AA	GG	X_X	X_X
7._GC-08-285-8-57	GG	GG	TT	TT	GG	GG	CC	CT	GT	AA	AA	GG	X_X	X_X
8._GC-08-285-8-57	GG	GG	TT	TT	GG	GG	CC	CT	GT	AA	AA	GG	X_X	X_X
9._RUQ_17	GG	_	TT	TT	GG	GG	CC	CT	GT	AA	_	_	X_X	X_X
10._RUQ_17	_	_	_	_	GG	_	_	_	_	AA	_	_	X_X	X_X
11._RUQ_17	_	GG	TT	AA	GG	CC	CC	AG	AC	AA	AA	GG	X_X	X_X

Input profile: LF_1

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Malaysian Cocoa Board (MCB), Malaysia

Location: C0298

Dapeng Zhang, 2016

1._LF_1

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8857 8

Dapeng Zhang, 2016

2._LF_1

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8857 7

Dapeng Zhang, 2016

3._LF_1

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8857 4

Dapeng Zhang, 2016

4._LF_1

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8857 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

5._LF_1 GC-08-285-8-57

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

6._LF_1 GC-08-285-8-57

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

7._LF_1 GC-08-285-8-57

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

8._LF_1 GC-08-285-8-57

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

9._LF_1 RUQ_17

identical
21 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

10._LF_1 RUQ_17

96.2 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

11._LF_1 RUQ_17

51.5 %
33 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25